Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRP | rs6050859 | chr20:25715345 | T/C | 9.79E-9 | 212 | 16.43 | 17.47 | 4.5 | KM Plot |
| KIRP | rs6050862 | chr20:25718020 | G/T | 1.08E-8 | 213 | 16.43 | 15.88 | 4.5 | KM Plot |
| KIRP | rs6050870 | chr20:25736213 | T/A | 9.32E-9 | 212 | 16.43 | 14.83 | 4.73 | KM Plot |
| KIRP | rs6051082 | chr20:25976737 | T/C | 8.45E-9 | 208 | 17.62 | 13.13 | 4.73 | KM Plot |
| KIRP | rs60632610 | chr10:75415677 | C/T | 4.91E-6 | 212 | 16.47 | 15.07 | 5.38 | KM Plot |
| KIRP | rs6063312 | chr20:47343059 | G/T | 0 | 214 | 16.5 | 15.33 | 0.97 | KM Plot |
| KIRP | rs6063313 | chr20:47343532 | G/A | 0 | 214 | 16.5 | 14.38 | 0.87 | KM Plot |
| KIRP | rs60716620 | chr1:95287370 | T/G | 0.000347 | 206 | 15.88 | 17.03 | 13.17 | KM Plot |
| KIRP | rs607273 | chr11:116862818 | A/T | 0.000462 | 210 | 11.43 | 15.28 | 16.43 | KM Plot |
| KIRP | rs60809795 | chr10:75524021 | G/A | 0 | 212 | 16.45 | 14.95 | 2.47 | KM Plot |
| KIRP | rs60896094 | chr11:34806561 | A/G | 0 | 214 | 15.2 | 17.73 | 3.83 | KM Plot |
| KIRP | rs60919592 | chr16:4530576 | C/A | 3.38E-6 | 214 | 16.45 | 12.63 | 10.83 | KM Plot |
| KIRP | rs6095256 | chr20:47340806 | C/T | 0 | 213 | 16.53 | 13.43 | 0.77 | KM Plot |
| KIRP | rs6095261 | chr20:47346494 | C/A | 0 | 214 | 16.5 | 14.38 | 0.87 | KM Plot |
| KIRP | rs6100354 | chr20:37226737 | C/T | 4.44E-16 | 212 | 6.7 | 24.9 | 15.88 | KM Plot |